# # Copyright (c) 2007 Helmut Merz helmutm@cy55.de # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA # """ Working transparently with the R statistics package. $Id$ """ import os import rpy from rpy import r from zope.proxy import removeAllProxies from zope.traversing.browser import absoluteURL from cybertools.pyscript.plot import registerImage # not used (yet?): class RWrapper(object): def __init__(self, context): self.context = context def __getattr__(self, attr): value = getattr(self.context, attr) return removeAllProxies(value) def __call__(self, *args, **kw): value = self.context.__call__(*args, **kw) value = removeAllProxies(value) return RWrapper(value) rx = RWrapper(r) with_mode = RWrapper(rpy.with_mode) #as_py = RWrapper(rpy.as_py) def gdd(**kw): r.library('GDD') filename = os.tempnam(None, 'rplot') robj = r.GDD(filename, type='jpg', **kw) return filename + '.jpg', robj class RStat(object): def __init__(self, context, request): self.context = context self.request = request def graphics(self, **kw): request = self.request context = self.context fn, robj = gdd(**kw) key = registerImage(fn) return '%s/@@plot?image=%s.jpg' % (absoluteURL(context, request), key) def getDataFrame(self, data): """ Return an R data.frame. The ``data`` argument is a sequence of tuples (rowId, columnId, value). Elements with a columnId that is not present in all rows is omitted. """ def checkId(mapping, id): for element in mapping.values(): if id not in element: return False return True data = sorted(data) rows = {} columns = {} dataMapping = {} for rowId, columnId, value in data: rows.setdefault(rowId, []).append(columnId) columns.setdefault(columnId, []).append(rowId) dataMapping[(rowId, columnId)] = value columnsToOmit = [] for rowId, row in rows.items(): for columnId in row: if not checkId(rows, columnId): columnsToOmit.append(columnId) rowsToOmit = [] for columnId, column in columns.items(): for rowId in column: if not checkId(columns, rowId): rowsToOmit.append(rowId) r.library('ltm') result = {} #for rowId, columnId, value in data: #if columnId not in columnsToOmit: # if rowId not in rowsToOmit: # result.setdefault(rowId, []).append(value) for (rowId, columnId), value in sorted(dataMapping.items()): if rowId not in rowsToOmit: result.setdefault(rowId, []).append(value) self.intermediateData = result matrix = rpy.with_mode(rpy.NO_CONVERSION, r.data_frame)(**result) return matrix